Getting Started

Prerequisites

• Python 3.8+
• pip / virtual environment recommended
• Quarto (required)
• SciClaw 0.2.8+ (required for scientific authoring workflows)

Validate toolchain before running workflows:

quarto check
sciclaw --version

Installation

pip install pophealth-observatory

From source (development):

git clone https://github.com/paulboys/PopHealth-Observatory.git
cd PopHealth-Observatory
pip install -e .[dev,docs]

First Manifest

from pophealth_observatory.observatory import NHANESExplorer
exp = NHANESExplorer()
manifest = exp.get_detailed_component_manifest(as_dataframe=True)
print(manifest['summary_counts'])

Streamlit App

streamlit run apps/streamlit_app.py